I'm a bit confused as to why diarrhea is such a cause for concern while you're on the pill. Suppose you take your pill and an hour later you have an upset stomach. Food remains in the stomach for several hours after consumption, and thus would not pass directly through the gastrointestinal track. Anything leaving your body, I would assume, would be the remnants of what already exists in the small and large intestines. Additionally, the pill is absorbed directly into the blood stream through the lining of the stomach. So how would diarrhea affect pill effectiveness?
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