My Rizal studies professor told us that Rizal was chosen at that time because it was politically expedient and won't antagonize the Americans who were technically the 'Colonial rulers' of the Philippines. Rizal did not advocate armed insurgency against Spain and simply wanted equal rights for the Insulares or Philippine-born spaniards, mestizos, and the middle class... he did not really want to drive out Spain, but he antagonized the Church and the Friars had him executed because of his books. Whereas Bonifacio actually fought the Spaniards, shed blood and wanted Filipinos to govern the country ... this was not politically acceptable to the Americans at that time because this could ignite nationalistic fervor and encourage insurrection or at the very least movement towards independence!
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